PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020891-PA
Common NameOsI_23697
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 286aa    MW: 30341 Da    PI: 6.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020891-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09117164455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  BGIOSGA020891-PA 117 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 164
                       8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15111182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.93E-10111168No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14113181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6117164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MHHHSPPPPP DLSSAVGEIH PPLASAARSS SNGGGSGGSF TALLGLPTSQ AMELLLPTAA  60
ASAPPPPPAF PADPHLGKAA AKKGKTAASG EDGGDGGEDE KPAYVHVRAR RGQATDSHSL  120
AERARREKIN ARMELLKELV PGCSKVSGTA LVLDEIINHV QSLQRQVEYL SMRLAAVNPR  180
VDFGGLDNFL TTECGRITGL NYKNGMDLEQ VTWPDMGVHG ARNLMQLQQQ FWHGDLAHPL  240
QPPSQWEKRT DTNPPVFSNS SSSLFGYDLA SSGAPAQTGN KLKTEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.49520.0flower| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329809930.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709700.0AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641463.11e-153PREDICTED: transcription factor bHLH48 isoform X2
SwissprotQ8VZ021e-49BH048_ARATH; Transcription factor bHLH48
TrEMBLB8B4L60.0B8B4L6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA020891-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-51bHLH family protein